Browse by Committee Member

2025

Chakravorty, Arun (2025) Bridging Space and Time: Resolving the Temporal Dynamics of the Seminiferous Epithelial Cycle Using Spatial Transcriptomics. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/2rcd-0v79. https://resolver.caltech.edu/CaltechTHESIS:05112025-035044867

Honson, Drew Daniel (2025) Development and Application of Proteomic and Genomic Methods in RNA Biology. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/08dq-1q63. https://resolver.caltech.edu/CaltechTHESIS:12092024-181948039

Sullivan, Delaney Kalcey (2025) Software, Tools, and Methods Development for Single-Cell Transcriptomics. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/kee5-ty36. https://resolver.caltech.edu/CaltechTHESIS:05232025-094543832

Yang, Yujing (2025) Exploring Cell Diversity in Complex Tissues through Spatial Genomics and Spatial Transcriptomics. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/r85x-qs80. https://resolver.caltech.edu/CaltechTHESIS:05302025-191432965

2024

Goronzy, Isabel Nadine (2024) Higher-Order Chromatin States and Nuclear Structures Regulating Gene Expression. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/8gm2-jn84. https://resolver.caltech.edu/CaltechTHESIS:07272023-175309910

Guo, Jimmy Kang (2024) Defining the Universe of Functional RNA-Protein Interactions. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/wbvq-bz46. https://resolver.caltech.edu/CaltechTHESIS:05012024-121056794

Page, Katharine-Rose (2024) Using Functional Genomics to Characterize Biogenesis and Quality Control Pathways in the Mammalian ER. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/4c7k-yw62. https://resolver.caltech.edu/CaltechTHESIS:11062023-233057820

Perez, Andrew Alexander (2024) ChIP-DIP: a Multiplexed Method for Mapping Proteins to DNA Uncovers Combinatorics Controlling Gene Expression. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/691f-y924. https://resolver.caltech.edu/CaltechTHESIS:05262024-003033193

Strehle, Mackenzie (2024) Mechanisms of Xist-Mediated Gene Silencing During the Initiation and Maintenance of X Chromosome Inactivation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/nxq5-hj97. https://resolver.caltech.edu/CaltechTHESIS:04182024-125718373

Zhu, Zikun (2024) Spatiotemporal Regulation of Nascent Protein Targeting. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/ybz3-4m48. https://resolver.caltech.edu/CaltechTHESIS:05302024-023258565

2023

Bhat, Prashant (2023) On the Role of Three-Dimensional Genome Organization in Gene Regulation and mRNA Splicing. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/vg8a-y851. https://resolver.caltech.edu/CaltechTHESIS:05302023-040856946

Jorgensen, Victoria Lynn (2023) Stem Cell-Derived Embryo Models in Mouse and Human to Illuminate the “Black Box” of Pre- to Post-Implantation Development. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/t1fe-3915. https://resolver.caltech.edu/CaltechTHESIS:06112023-211027828

Luo, Yicheng (2023) Maternally Inherited siRNAs Initiate piRNA Cluster Formation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/f2nh-8w08. https://resolver.caltech.edu/CaltechTHESIS:11042022-055503832

Ma, Yitong (2023) Multicellular Synthetic Biology in Mammalian Systems. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/w0q1-7s17. https://resolver.caltech.edu/CaltechTHESIS:04132023-015900885

2022

Arrastia, Mary Villanueva (2022) Development of Single-Cell SPRITE: a Tool for Measuring Heterogeneity of 3D DNA Organization. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/w70x-2294. https://resolver.caltech.edu/CaltechTHESIS:10012021-223453672

2021

Banerjee, Abhik Kumar (2021) Diverse Roles of RNA-protein Interactions: From Viral Antagonism to Mammalian Development. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/tfb9-n887. https://resolver.caltech.edu/CaltechTHESIS:02032021-180657616

Eng, Chee Huat (Linus) (2021) Plus Ultra: Genome-Wide Spatial Transcriptomics with RNA seqFISH+. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/nvfe-5j74. https://resolver.caltech.edu/CaltechTHESIS:05302021-051953086

Irizarry, Jihyun (2021) Temporally Changing Roles of Morphogen Dorsal in the Drosophila Early Embryo. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/t53b-vc87. https://resolver.caltech.edu/CaltechTHESIS:09052020-090207113

Quintero Cadena, Porfirio (2021) Mechanism and Scaling of Eukaryotic Transcription Activation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/m21w-8461. https://resolver.caltech.edu/CaltechTHESIS:07072020-154545363

Takei, Yodai (2021) Integrated Spatial Genomics Reveals Organizational Principles of Single-Cell Nuclear Architecture. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/4ces-zm75. https://resolver.caltech.edu/CaltechTHESIS:06022021-012404326

2020

Quinodoz, Sofia Agustina (2020) Higher-Order RNA and DNA Hubs Shape Genome Organization in the Nucleus. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/k33x-9k36. http://resolver.caltech.edu/CaltechTHESIS:03132019-143409731

Ravindra Kumar, Sripriya (2020) Engineering Vectors for Non-Invasive Gene Delivery to the Central Nervous System using Multiplexed-CREATE. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/sgez-zn27. https://resolver.caltech.edu/CaltechTHESIS:05312020-230436411

Zhukov, Dmitriy Vladimirovich (2020) Facilitating Miniaturized Bioanalytical Assays in Microfluidic Devices. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/x9wq-h920. https://resolver.caltech.edu/CaltechTHESIS:02062020-145031701

2019

Frankiw, Luke Steven (2019) mRNA Splicing-Mediated Gene Expression Regulation in Innate Immunity. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/NBQG-BS67. https://resolver.caltech.edu/CaltechTHESIS:06052019-122355847

He, Peng (2019) The Changing Mouse Embryo Transcriptome at Whole Tissue and Single-Cell Resolution. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/35S4-HG18. https://resolver.caltech.edu/CaltechTHESIS:02192019-004236200

2018

Chen, Chun-Kan (2018) Revealing the Mechanism of Xist-mediated Silencing. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z94J0C9J. https://resolver.caltech.edu/CaltechTHESIS:11032017-102218314

2017

Selck, David Anthony (2017) Microfluidics for Molecular Measurements and Quantitative Distributable Diagnostics. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9ZC80XT. https://resolver.caltech.edu/CaltechTHESIS:07292016-195927111

2015

Mehta, Arnav (2015) MicroRNA-132 is a Physiological Regulator of Hematopoietic Stem Cell Function and B-cell Development. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9XS5SBD. https://resolver.caltech.edu/CaltechTHESIS:03252015-144135628

Singer, Zakary Sean (2015) Metastability and Dynamics of Stem Cells: From Direct Observations to Inference at the Single Cell Level. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9ST7MS1. https://resolver.caltech.edu/CaltechTHESIS:05262015-152206802

Yong, John (2015) Dynamics and Heterogeneity of Gene Expression and Epigenetic Regulation at the Single-Cell Level. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9ZC80VX. https://resolver.caltech.edu/CaltechTHESIS:04292015-153123844

2014

Abelin, Anna Cecilia Therese (2014) A Ratiometric-Based Measure of Gene Co-Expression. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9JH3J5B. https://resolver.caltech.edu/CaltechTHESIS:05072014-160838588