Browse by Committee Member

2023

Eldjarn Hjoerleifsson, Kristjan (2023) Graph Modeling for Genomics and Epidemiology. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/s32c-a211. https://resolver.caltech.edu/CaltechTHESIS:02122023-103759689

Moses, Lambda (2023) Computation Foundations of Spatial Transcriptomics. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/rt24-pq60. https://resolver.caltech.edu/CaltechTHESIS:05312023-213322223

Schulte, Samuel Jordan (2023) New HCR Technologies: 10-Plex Quantitative Spectral Imaging of RNAs and Proteins; Multiplexed Quantitative Imaging of Protein:Protein Complexes; and Sensitive, Instrument-Free, At-Home Pathogen Detection. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/nzk8-2d38. https://resolver.caltech.edu/CaltechTHESIS:06092023-193714022

2021

Anaya, Michael Aurelio (2021) Modernization of Monoclonal Antibody Screening and Protein-interaction Assays. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/xy05-bb64. https://resolver.caltech.edu/CaltechTHESIS:06072021-233800139

Zhou, Wen (2021) Single-Cell Analysis of Normal and Perturbed Early T-Cell Developmental Processes. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/733t-mg82. https://resolver.caltech.edu/CaltechTHESIS:01292021-130102777

2020

Quinodoz, Sofia Agustina (2020) Higher-Order RNA and DNA Hubs Shape Genome Organization in the Nucleus. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/k33x-9k36. http://resolver.caltech.edu/CaltechTHESIS:03132019-143409731

2019

He, Peng (2019) The Changing Mouse Embryo Transcriptome at Whole Tissue and Single-Cell Resolution. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/35S4-HG18. https://resolver.caltech.edu/CaltechTHESIS:02192019-004236200

Shao, Zixuan (2019) Biological Responses to Therapeutic Treatments of Human Vascular Diseases. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/P2S4-AY40. https://resolver.caltech.edu/CaltechTHESIS:05302019-145256322

2018

Chen, Chun-Kan (2018) Revealing the Mechanism of Xist-mediated Silencing. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z94J0C9J. https://resolver.caltech.edu/CaltechTHESIS:11032017-102218314

DeSalvo, Gilberto (2018) Transcriptional Enhancer Activity of Biochemically Marked Genomic Elements. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/J73E-Y429. https://resolver.caltech.edu/CaltechTHESIS:06112018-020802925

Rogers, Alicia Kathryn (2018) Mechanisms of Transcriptional Silencing by the Nuclear Piwi Protein in Drosophila Germ Cells. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9KK991X. https://resolver.caltech.edu/CaltechTHESIS:04092018-141017685

2017

Fisher-Aylor, Katherine Irene (2017) Chromatin Topology and Transcription in Myogenesis. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9K07290. https://resolver.caltech.edu/CaltechTHESIS:09302016-110627143

2016

Tobin, Cory James (2016) Morphogenesis of the Arabidopsis Shoot Apical Meristem. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9NK3C0N. https://resolver.caltech.edu/CaltechTHESIS:05162016-155222105

2015

Ho, Margaret Ching Wai (MC) (2015) Discovery of Active Cis-Regulatory Elements and Transcription Factor Footprints in Nematodes Using Functional Genomics Approaches. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9G73BVF. https://resolver.caltech.edu/CaltechTHESIS:05282015-161443045

2014

Wang, Yun Elisabeth (2014) Characterizing the Regulation of Mitochondrial Nucleoids. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/1MN9-DR40. https://resolver.caltech.edu/CaltechTHESIS:05282014-004119763

Abelin, Anna Cecilia Therese (2014) A Ratiometric-Based Measure of Gene Co-Expression. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9JH3J5B. https://resolver.caltech.edu/CaltechTHESIS:05072014-160838588

Kirilusha, Anthony George (2014) Transcription Factor Occupancy in Differentiating Skeletal Muscle. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/4Q24-CJ96. https://resolver.caltech.edu/CaltechTHESIS:06112014-114426786

Marinov, Georgi Kolev (2014) Functional Genomic Studies of the Structure and Regulation of Eukaryotic Transcriptomes. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/1BXM-ZM46. https://resolver.caltech.edu/CaltechTHESIS:05122014-102729631

2013

Hernandez, Gilberto (2013) Building a Gene Regulatory Network in Adult Mouse Skeletal Muscle Following Nerve Injury: Transcriptome Characterization and New Model for Functional cis-Regulatory Analysis In Vivo. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9833Q0J. https://resolver.caltech.edu/CaltechTHESIS:09092012-232337189

Tetreault, Nicole Anne (2013) Microglia in the Cerebral and Cerebellar Cortices in Individuals with Autism. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/VGPA-4D87. https://resolver.caltech.edu/CaltechTHESIS:06072013-005232013

2012

Choe, Andrea (2012) Pheromones in Free-Living and Parasitic Nematodes. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/DX46-C462. https://resolver.caltech.edu/CaltechTHESIS:07042011-125318322

2011

Damle, Sagar S. (2011) A Study of Information Processing in the Sea Urchin Embryo by Rewiring Mesodermal Gene Regulatory Networks and cis-Regulatory Analysis of Skeletogenic Regulators. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/186Z-VJ85. https://resolver.caltech.edu/CaltechTHESIS:01202011-110522273

Kuntz, Steven Gregory (2011) hlh-1 and the C. elegans Body Wall Muscle Transcriptional Differentiation Network. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/18XS-YM65. https://resolver.caltech.edu/CaltechTHESIS:10212010-102536869

Schaedel, Oren Noah (2011) Dynamic Regulation of the Dauer Decision. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/JZ9E-AD68. https://resolver.caltech.edu/CaltechTHESIS:04272011-021639361

2010

Dalal, Chiraj Kiran (2010) Causes and Consequences of Gene Expression Noise. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/MHSR-9875. https://resolver.caltech.edu/CaltechTHESIS:03312010-150904525

Ramírez-Lugo, Juan S. (2010) The Activation of ATR in Response to Double-Stranded DNA Breaks. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/EG9Z-0H60. https://resolver.caltech.edu/CaltechTHESIS:05262010-155732939

Zarnegar, Mark Andrew (2010) Investigating the Transcriptional Mechanisms Controlling Sfpi1, a Critical Regulatory Node Within Multiple Lineage Specifying Subcircuits of the Hematopoietic Gene Regulatory Network. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/ST6P-C529. https://resolver.caltech.edu/CaltechTHESIS:05062010-152920403

2009

Medina-Marino, Andrew G. A. (2009) Construction and Initial Characterization of the Densin Knockout Mouse. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/HYHX-A061. https://resolver.caltech.edu/CaltechETD:etd-06022009-194041

2008

Cox, Robert Sidney, III (2008) Transcriptional Regulation and Combinatorial Genetic Logic in Synthetic Bacterial Circuits. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/KRW6-DH88. https://resolver.caltech.edu/CaltechETD:etd-03042008-130011

Mortazavi, Ali (2008) Structure and Evolution of Mammalian Gene Networks. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/FT1Y-M657. https://resolver.caltech.edu/CaltechETD:etd-05292008-140438

2007

Brown, Charles Titus (2007) Tackling the Regulatory Genome. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/STPG-0P56. https://resolver.caltech.edu/CaltechETD:etd-12192006-100331

Kim, Jongmin (2007) In Vitro Synthetic Transcriptional Networks. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Q9YA-N192. https://resolver.caltech.edu/CaltechETD:etd-12182006-115817

Teal, Tracy Kristin (2007) Studies of the Spatial Organization of Metabolism in Shewanella oneidensis and Pseudomonas aeruginosa Biofilms. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/2gdf-yh13. https://resolver.caltech.edu/CaltechETD:etd-05312007-190155

2005

Chow, Stephanie Sienyee (2005) Speciation in Digital Organisms. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/X1PD-TN75. https://resolver.caltech.edu/CaltechETD:etd-06062005-171257

Hart, Christopher Edward (2005) Inferring Genetic Regulatory Network Structure: Integrative Analysis of Genome-Scale Data. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/2JXP-3G71. https://resolver.caltech.edu/CaltechETD:etd-03152005-110423

Murphy, John Frank (2005) Methods for Collection and Processing of Gene Expression Data. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/8p8e-2147. https://resolver.caltech.edu/CaltechETD:etd-06252004-101813

2004

Heilshorn, Sarah Christine (2004) Design and Characterization of Artificial Extracellular Matrix Proteins for Use as Small-Diameter Vascular Grafts. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/BX95-3X10. https://resolver.caltech.edu/CaltechETD:etd-05242004-103633

2002

Shuey, David John (2002) A Detailed Analysis of the DNA Binding Properties and the Affinity Purification of the Drosophila Heat-Shock Transcription Factor. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/y91j-s092. https://resolver.caltech.edu/CaltechTHESIS:01312012-161653671

2001

Chi, Yong (2001) Negative Regulation of Transcription Factors by Srb10 Cyclin-Dependent Kinase. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/tb1q-fz89. https://resolver.caltech.edu/CaltechTHESIS:03072014-113238525

Fang, Xiangdong (2001) Developmentally Regulated Transcription Factors in Drosophila melanogaster. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/h17r-qa60. https://resolver.caltech.edu/CaltechTHESIS:03182014-110657424

Gould, Anita (2001) Expression of Eph-Family Receptor Tyrosine Kinases and Ephrins in the Tadpole of the Frog Xenopus Laevis, and Possible Roles in the Development of Retinotectal Topography. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/cj8r-nj43. https://resolver.caltech.edu/CaltechTHESIS:03102014-111038092

Lyapina, Svetlana Anatol'Evna (2001) Characterization of the Human SCF Ubiquitin Ligases - Structure, Function, and Regulation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/apdy-3d30. https://resolver.caltech.edu/CaltechTHESIS:03072014-090536401

Shou, Wenying (2001) Diverse Mechanisms of Regulating the Mitotic Cell Cycle. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/TP2C-Q082. https://resolver.caltech.edu/CaltechETD:etd-02032005-110205

2000

Chen, Wen J. (2000) Extragenic Suppressors of Heat Shock Activated GOα. Topic I: Cyclin in Heat Shock Response. Topic II: Signaling by Go and Gq in C. elegans. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/2sv5-sd03. https://resolver.caltech.edu/CaltechTHESIS:08112020-100312577

Csete, Marie Elizabeth (2000) Less is More: Oxygen and Stem Cell Regeneration. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/MP6F-KN97. https://resolver.caltech.edu/CaltechETD:etd-12032003-091634

1999

Bashirullah, Arash (1999) Temporal and spacial control of RNA stability in the early embryo of Drosophila melanogaster. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/HWD3-HB90. https://resolver.caltech.edu/CaltechTHESIS:03052014-104605861

1998

Cornelison, Dawn D. W. (1998) Gene expression in wild-type and MyoD-null satellite cells: regulation of activation, proliferation, and myogenesis. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/09DA-FF55. https://resolver.caltech.edu/CaltechTHESIS:04072011-104210966

1996

Patapoutian, Ardem (1996) The Role of the MyoD Family Genes during Mouse Development. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/7p08-6588. https://resolver.caltech.edu/CaltechTHESIS:10042021-225839792

1995

Hacia, Joseph Gerard (1995) The use of modified oligonucleotides to investigate biological applications for triple helix formation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/15j7-1b14. https://resolver.caltech.edu/CaltechETD:etd-10122007-074500

Halsell, Susan Richardson (1995) Expression and localization of Hsp83 RNA in the early Drosophila embryo. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/cx4q-tz48. https://resolver.caltech.edu/CaltechETD:etd-10092007-075248

1994

Chen, Dan (1994) Molecular mechanisms of interleukin-2 gene inducibility: developmental control and combinatorial action of transcription factors. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/snb3-5k23. https://resolver.caltech.edu/CaltechTHESIS:04262013-142519914

Zhu, Jian (1994) Indentification and characterization of a novel CA^(2+)-binding protein in avian erythrocytes. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/72bt-qx11. https://resolver.caltech.edu/CaltechTHESIS:05172013-161307081

1993

Clark, Steven Manning (1993) Advances in scanning force microscopy of biological structures. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/0vhp-pk35. https://resolver.caltech.edu/CaltechTHESIS:11192012-103302776

Meier, Joseph Thomas (1993) A Biological Arms Race: Site Specific DNA Recombination in Competing Immunofunctional Proteins. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/fd8q-cb34. https://resolver.caltech.edu/CaltechTHESIS:12262012-130125197

Wang, Yukang (1993) Transcriptional regulation of T cell receptor genes by a novel CACCC box binding protein. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/x9cm-6a16. https://resolver.caltech.edu/CaltechTHESIS:01102013-132313493

1992

Michelsohn, Arie M. (1992) Sequential Steps in the Determination of Chromaffin Cell Fate by Glucocorticoids. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/pbh4-ts59. https://resolver.caltech.edu/CaltechTHESIS:08242011-162533018

1991

Bowman, John L. (1991) Molecular genetics of flower development in Arabidopsis thaliana. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/VJCE-Z966. https://resolver.caltech.edu/CaltechETD:etd-06212007-131544

Herman, Paul Kenneth (1991) Protein sorting in the eukaryotic secretory pathway : an essential role for a novel yeast protein kinase. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/38ba-0w26. https://resolver.caltech.edu/CaltechETD:etd-06202007-083735

Hoh, Jan Hakan (1991) Studies on the structure and molecular diversity of the gap junction. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/8n7d-2t98. https://resolver.caltech.edu/CaltechETD:etd-06212007-075739

Lochrie, Michael Alan (1991) Molecular biology of G protein alpha subunits from bovine photoreceptors and the nematode Caenorhabditis elegans. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/zqph-5443. https://resolver.caltech.edu/CaltechETD:etd-07092007-132214

1990

Fors, Lance (1990) Analysis of the Structure, Expression and Evolution of the Shark Myelin Proteins and Genes. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/840h-0p67. https://resolver.caltech.edu/CaltechETD:etd-06072007-082551

Mathers, Peter Hiram (1990) Developmental regulation and chromosomal decondensation of the 68C glue gene cluster in Drosophila melanogaster. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/qm6d-4135. https://resolver.caltech.edu/CaltechETD:etd-06122007-144634

Topol, Joanne (1990) Transcriptional control of the drosophila segmentation gene fushi tarazu. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/mvhc-0a34. https://resolver.caltech.edu/CaltechETD:etd-08292007-085427

1989

Sucov, Henry Michael (1989) Characterization and Developmental Regulation of a Gene Expressed Specifically in the Skeletogenic Lineage of the Sea Urchin Embryo. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/zm4z-4942. https://resolver.caltech.edu/CaltechTHESIS:08262013-094712996

Vijayraghavan, Usha (1989) A Genetic and Biochemical Analysis of pre-mRNA Splicing in Saccharomyces cerevisiae. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/cxmk-nj42. https://resolver.caltech.edu/CaltechTHESIS:10172013-115606044

1988

Chang, Caren (1988) Molecular Genetic Studies in Arabidopsis thaliana: I. Cloning and Characterization of the Alcohol Dehydrogenase Gene; II. Complementation of an Alcohol Dehydrogenase Mutant; III. A Restriction Fragment Length Polymorphism Map of the Genome. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/H8DS-A792. https://resolver.caltech.edu/CaltechTHESIS:01182013-085552595

Garfinkel, Mark David (1988) Structural and Functional Studies of the 68C Glue Protein Gene Cluster of Drosophila melanogaster. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/gjtw-k928. https://resolver.caltech.edu/CaltechTHESIS:01222013-140636948

Hu, Mickey ChienTsung (1988) I. The E. coli Lac Operator-Repressor System is Functional for Control of Gene Expression in Animal Cells. II. Molecular Cloning and Characterization of the Mouse Skeletal Muscle (α) Actin Gene. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/2a59-9p43. https://resolver.caltech.edu/CaltechTHESIS:01232013-085319311

Kamb, Alexander (1988) Molecular Biology of Shaker, a Drosophila Gene that Encodes Multiple Potassium Channel Components. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/a32z-ye28. https://resolver.caltech.edu/CaltechTHESIS:01222013-094834563

King, Michael Paul (1988) Studies of Human Mitochondria. I. Steady-State Levels and Metabolic Properties of the Mitochondrial tRNAs. II. Injection of Mitochondria into Human Cells Leads to a Rapid Replacement of the Endogenous Mitochondrial DNA. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/45zh-5315. https://resolver.caltech.edu/CaltechTHESIS:02212013-094740326

1987

Matthews, Beverley Bond (1987) Structure and Expression of the Actin Gene Family of Drosophila melanogaster. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/05zz-5w73. https://resolver.caltech.edu/CaltechTHESIS:02152019-094650551

Mattox, William Wayne (1987) The Molecular Structure of the Beadex and Heldup-A Loci of Drosophila melanogaster. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/c2k4-a231. https://resolver.caltech.edu/CaltechTHESIS:10212019-143142376

Ngai, John J. (1987) Expression of the Genes Encoding the Cytoskeletal Proteins Vimentin and Protein 4.1. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/qh54-ka26. https://resolver.caltech.edu/CaltechTHESIS:10222019-120541581

Yu, Lei (1987) The Nicotinic Acetylcholine Receptor: Gene Expression and Ion Channel Function. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/fj5c-4h83. https://resolver.caltech.edu/CaltechTHESIS:10312019-114338923

1986

Bennett, Mark Knowles (1986) Brain Type II Calcium and Calmodulin-Dependent Protein Kinase: Purification, Characterization and Molecular Cloning. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/a6p9-vd59. https://resolver.caltech.edu/CaltechTHESIS:04122019-162032124

Fisher, Douglas Arthur (1986) Class I Genes of the Major Histocompatibility Complex: Structural Studies on Genes of the Tla Locus. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/ymba-8s86. https://resolver.caltech.edu/CaltechTHESIS:10102019-163948204

Gaines, George Loweree, III (1986) The Control of RNA Synthesis in Isolated HeLa Cell Mitochondria. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/1hj5-em11. https://resolver.caltech.edu/CaltechTHESIS:04172019-094731539

Lee, James Joseph (1986) The Genomic Organization and Expression of the Strongylocentrotus purpuratus Actin Gene Family. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/b4m8-v194. https://resolver.caltech.edu/CaltechTHESIS:04172019-114252554

Mayne, Katherine Mixter (1986) Structural and Functional Studies on the Subunits of the Nicotinic Acetylcholine Receptor. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/nvv4-qt08. https://resolver.caltech.edu/CaltechTHESIS:04152019-153632089

Pruitt, Robert Edwin (1986) Characterization of the Genome of Arabidopsis thaliana. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/mefh-yn26. https://resolver.caltech.edu/CaltechTHESIS:02142013-150009074

1985

Kim, Stuart Kilsu (1985) Antibody Genes, Oncogenes and Antisense Genes. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/xsdv-c915. https://resolver.caltech.edu/CaltechTHESIS:01312019-124340304

Roach, Arthur Henry (1985) The Genes for Myelin Basic Protein in Normal and Shiverer Mutant Mice. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/4d7s-zs52. https://resolver.caltech.edu/CaltechTHESIS:01312019-172314851