Browse by Committee Member

A

Andrade Meirelles, Lucas (2022) The Nuanced Effects of Redox-Active Metabolites on Bacterial Physiology and Antibiotic Susceptibility. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/67p2-q992. https://resolver.caltech.edu/CaltechTHESIS:02152022-081613451

Acharya, Aneesh (2016) Multiplexed Analysis of Diverse RNA Classes via Hybridization Chain Reaction. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z95M63N0. https://resolver.caltech.edu/CaltechTHESIS:06032016-143422651

Axelrod, Blake Waters (2009) Single Cell Pico Force Microscopy: A Novel Tool for High Resolution Measurement of Cell Forces. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/ESGS-Z942. https://resolver.caltech.edu/CaltechETD:etd-04082009-102110

B

Bhamidipati, Pranav Subramanyam (2024) Modeling and Design of Synthetic Biochemical Circuits for Biological Phenotypes. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/gpc6-hb40. https://resolver.caltech.edu/CaltechTHESIS:06012024-054725051

Bhat, Prashant (2023) On the Role of Three-Dimensional Genome Organization in Gene Regulation and mRNA Splicing. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/vg8a-y851. https://resolver.caltech.edu/CaltechTHESIS:05302023-040856946

Banerjee, Abhik Kumar (2021) Diverse Roles of RNA-protein Interactions: From Viral Antagonism to Mammalian Development. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/tfb9-n887. https://resolver.caltech.edu/CaltechTHESIS:02032021-180657616

Bogatyrev, Said R. (2020) Development of Analytical Tools and Animal Models for Studies of Small-Intestine Dysbiosis. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/VJDZ-7B52. http://resolver.caltech.edu/CaltechTHESIS:10012019-095132591

Barnes, Stephanie Loos (2018) Decoding the Regulatory Genome: Quantitative Analysis of Transcriptional Regulation in Escherichia coli. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/D13T-7868. https://resolver.caltech.edu/CaltechTHESIS:05292018-133205686

Belliveau, Nathan Maurice (2018) Quantitative Dissection of the Allosteric and Sequence-Dependent Regulatory Genome in E. coli. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9DN438T. https://resolver.caltech.edu/CaltechTHESIS:01052018-221609680

Bower, Danielle Vera Brown (2013) Chemical and Neural Regulation of Embryonic Branching Morphogenesis. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9SX6B6R. https://resolver.caltech.edu/CaltechTHESIS:05302013-135915010

Bayer, Travis Scott (2009) Synthetic Regulation and Genetic Control of an Ecological Strategy. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/3GDB-C409. https://resolver.caltech.edu/CaltechETD:etd-10162008-131654

Brenner, Sarah Katherine (2009) Engineering Synthetic Biofilm-Forming Microbial Consortia. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/PMZ3-4Z96. https://resolver.caltech.edu/CaltechETD:etd-04212009-104756

Balagaddé, Frederick Kiguli (2007) Microfluidic Technologies for Continuous Culture and Genetic Circuit Characterization. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/NJ5Z-XV43. https://resolver.caltech.edu/CaltechETD:etd-06112007-102627

Bao, Xiaoyan Robert (2007) Lost in a Crowd: Observations of Single DNA Knots and Single Mammalian Cells. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/F2XV-MC44. https://resolver.caltech.edu/CaltechETD:etd-04062007-163445

C

Chong, Lucy Shin (2021) Engineering and Delivery of Programmable Protein Circuits as Potential Therapeutic Devices. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/jdhe-by95. https://resolver.caltech.edu/CaltechTHESIS:06072021-211522720

Chure, Griffin Daniel (2020) The Molecular Biophysics of Evolutionary and Physiological Adaptation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/q8h6-xr92. https://resolver.caltech.edu/CaltechTHESIS:06022020-102020436

Chen, Chun-Kan (2018) Revealing the Mechanism of Xist-mediated Silencing. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z94J0C9J. https://resolver.caltech.edu/CaltechTHESIS:11032017-102218314

Cornejo de los Santos, Emmanuel Lorenzo (2015) Expanding the Toolkit for Synthetic Biology: Frameworks for Native-like Non-natural Gene Circuits. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9M61H64. https://resolver.caltech.edu/CaltechTHESIS:05182015-163708506

Choi, Harry Ming Tak (2010) Programmable In Situ Amplification for Multiplexed Bioimaging. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/K4A3-1K41. https://resolver.caltech.edu/CaltechTHESIS:12292009-170615072

Cox, Robert Sidney, III (2008) Transcriptional Regulation and Combinatorial Genetic Logic in Synthetic Bacterial Circuits. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/KRW6-DH88. https://resolver.caltech.edu/CaltechETD:etd-03042008-130011

Collins, Cynthia Hollie (2006) Directed Evolution of the Transcriptional Activator LuxR. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/61qd-8j79. https://resolver.caltech.edu/CaltechETD:etd-12272005-160649

D

Duan, Mengtong (Tom) (2024) Expanding Frontiers in Biomedical Imaging and Synthetic Biology: Dynamic Acoustic Reporter Gene Imaging and Ratio-Tuning of Mammalian mRNA Polycistronic Expression. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/avgk-yc71. https://resolver.caltech.edu/CaltechTHESIS:06032024-011201674

Dobreva, Tatyana (2022) Engineering Tools to Probe and Manipulate the Immune System at Single-Cell Resolution. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/n3rs-ft69. https://resolver.caltech.edu/CaltechTHESIS:10172021-215439860

Dalal, Chiraj Kiran (2010) Causes and Consequences of Gene Expression Noise. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/MHSR-9875. https://resolver.caltech.edu/CaltechTHESIS:03312010-150904525

Dunlop, Mary Julia (2008) Dynamics and Correlated Noise in Gene Regulation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/AC8V-6S05. https://resolver.caltech.edu/CaltechETD:etd-05302008-141602

Drummond, David Allan (2006) Misfolding Dominates Protein Evolution. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/DH8E-2N10. https://resolver.caltech.edu/CaltechETD:etd-06022006-154329

E

Edmonds, KeHuan Kuo (2022) Imaging Cell Lineage with a Synthetic Digital Recording System. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/a4m3-m603. https://resolver.caltech.edu/CaltechTHESIS:11272021-193744399

F

Frankiw, Luke Steven (2019) mRNA Splicing-Mediated Gene Expression Regulation in Innate Immunity. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/NBQG-BS67. https://resolver.caltech.edu/CaltechTHESIS:06052019-122355847

Frick, Christopher Lee (2019) How Single Cells Sense Smad3 Signal. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/WNM4-4R58. https://resolver.caltech.edu/CaltechTHESIS:05222019-160829503

Fisher-Aylor, Katherine Irene (2017) Chromatin Topology and Transcription in Myogenesis. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9K07290. https://resolver.caltech.edu/CaltechTHESIS:09302016-110627143

Ford, William Chastang (2012) I. Quantal Effects in Biochemical Cooperativity and a Proposed Mechanism for the Differentiation of Calcium Signaling in Synaptic Plasticity. II. Evolutionary Algorithms for the Optimization of Methods in Computational Chemistry. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9HH6H1Z. https://resolver.caltech.edu/CaltechTHESIS:05302012-122930768

G

Goronzy, Isabel Nadine (2024) Higher-Order Chromatin States and Nuclear Structures Regulating Gene Expression. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/8gm2-jn84. https://resolver.caltech.edu/CaltechTHESIS:07272023-175309910

Gong, Mengsha (2022) Remodeling Jellyfish. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/pfn8-aw15. https://resolver.caltech.edu/CaltechTHESIS:01032022-225455509

Guo, Shaobin (2017) Prototyping Diverse Synthetic Biological Circuits in a Cell-Free Transcription-Translation System. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9CR5RDK. https://resolver.caltech.edu/CaltechTHESIS:03082017-163613964

Goldberg, Mark David (2015) Development of Microfluidic Devices with the Use of Nanotechnology to Aid in the Analysis of Biological Systems Including Membrane Protein Separation, Single Cell Analysis, and Genetic Markers. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9P848V6. https://resolver.caltech.edu/CaltechTHESIS:06022015-150554177

Galloway, Kate Elizabeth (2012) The Development of RNA-based Control Systems to Regulate Signaling and Dictate Cell Fate in a Model MAPK Pathway. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/CBBN-GX03. https://resolver.caltech.edu/CaltechTHESIS:06072012-150636005

Garcia, Hernan G. (2011) Transcriptional Regulation by the Numbers. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/63RG-8P84. https://resolver.caltech.edu/CaltechTHESIS:12162010-123122193

Gu, Ming (2010) Interactions Between Hippocampal Areas CA3 and CA1 During Slow-Wave Sleep. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9BV7DMM. https://resolver.caltech.edu/CaltechTHESIS:03102010-232405639

Gordon, Sean Patrick (2009) Hormone and Gene Feedback during Development and Regeneration in Arabidopsis thaliana. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/T3CR-TC54. https://resolver.caltech.edu/CaltechETD:etd-05022009-103703

H

Huang, Jining (2023) Applications of Dynamic Nucleic Acid Nanotechnology in Closed-Loop Genetic Circuits and Detection of Viral Pathogens. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/54tw-ym95. https://resolver.caltech.edu/CaltechTHESIS:01172023-195222304

Hanewich-Hollatz, Mikhail Henning (2020) Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function via Dynamic RNA Nanotechnology. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/NS2B-DJ96. https://resolver.caltech.edu/CaltechTHESIS:11042019-135312842

Hsiao, Victoria (2016) Synthetic Circuits for Feedback and Detection in Bacteria. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9WD3XJW. https://resolver.caltech.edu/CaltechTHESIS:05082016-170628018

Hoenselaar, Andreas (2015) The Structure of Hippocampal Activity During REM Sleep. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z98W3B8H. https://resolver.caltech.edu/CaltechTHESIS:11172014-000718184

Hariadi, Rizal Fajar (2011) Non-Equilibrium Dynamics of DNA Nanotubes. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/6GQW-YG26. https://resolver.caltech.edu/CaltechTHESIS:06062011-122322347

Han, Lin (2008) In vitro DNA Mechanics in Gene Regulation: One Molecule at a Time. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/7573-A922. https://resolver.caltech.edu/CaltechETD:etd-01282008-150852

Hansen, Carl Lars Genghis (2004) Microfluidic Technologies for Structural Biology. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/N9T3-7114. https://resolver.caltech.edu/CaltechETD:etd-06012004-144201

I

Ivy, Tobin William (2024) Implementing and Modeling Gene Drives for Population Modification and Suppression. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/10pa-x574. https://resolver.caltech.edu/CaltechTHESIS:06042024-163846436

Inagaki, Hidehiko K. (2014) Neuronal Mechanism of State Control in Drosophila melanogaster. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/MPZX-TN59. https://resolver.caltech.edu/CaltechTHESIS:02112014-133121063

J

Jiang, Jialong (2024) Revealing Regulatory Network Organization Through Single-Cell Perturbation Profiling and Maximum Entropy Models. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/5zta-9818. https://resolver.caltech.edu/CaltechTHESIS:06032024-182223499

Jones, Daniel Lawson III (2014) Sequence-Function Relationships in E. coli Transcriptional Regulation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/4J7V-WD59. https://resolver.caltech.edu/CaltechTHESIS:06022014-165211576

K

Kuintzle, Rachael Christine (2023) Diversity in Notch Ligand-Receptor Signaling Interactions. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/w8gj-jb92. https://resolver.caltech.edu/CaltechTHESIS:05302023-215054202

Klumpe, Heidi Elizabeth (2021) Context-Dependent, Combinatorial Logic of BMP Signaling. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/3vv4-bk06. https://resolver.caltech.edu/CaltechTHESIS:05312021-221223611

Kim, Kibeom (2019) Memory and Decoding in Signaling Transduction Pathways. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/BJDQ-JX45. https://resolver.caltech.edu/CaltechTHESIS:06092019-220453694

Kim, Jinho (2017) Compact Microscope System for Biomedical Applications. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9H9937R. https://resolver.caltech.edu/CaltechTHESIS:04262017-114441886

Kuntz, Steven Gregory (2011) hlh-1 and the C. elegans Body Wall Muscle Transcriptional Differentiation Network. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/18XS-YM65. https://resolver.caltech.edu/CaltechTHESIS:10212010-102536869

Kim, Jongmin (2007) In Vitro Synthetic Transcriptional Networks. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Q9YA-N192. https://resolver.caltech.edu/CaltechETD:etd-12182006-115817

Kulkarni, Rajan P. (2006) Mechanics of the Cytoskeleton: Examining the Dynamics of Cytoplasmic Transport through Fluorescence Microscopy. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/85ea-ed40. https://resolver.caltech.edu/CaltechETD:etd-03112006-214258

Kartalov, Emil Paskalev (2004) Single-Molecule Detection and DNA Sequencing-by-Synthesis. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/50YQ-0S81. https://resolver.caltech.edu/CaltechETD:etd-05142004-100932

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Lubeck, Eric (2016) Towards in situ Single Cell Systems Biology. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9BK1999. https://resolver.caltech.edu/CaltechTHESIS:02262016-115004310

Lakhanpal, Amit (2014) Experimental and Theoretical Studies of Notch Signaling-Mediated Spatial Pattern. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/RGPT-RS80. https://resolver.caltech.edu/CaltechTHESIS:10312013-102814054

LeBon, Lauren E. (2014) The Logic of Receptor-Ligand Interactions in the Notch Signaling Pathway. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/83PA-9833. https://resolver.caltech.edu/CaltechTHESIS:05212014-094412950

Loson, Oliver Calvin (2014) Regulation of Mitochondrial Division by the Drp1 Receptors. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/J23G-KQ18. https://resolver.caltech.edu/CaltechTHESIS:05072014-160207088

Levine, Joseph H. (2012) Genetic Regulatory Circuit Dynamics: Analysis and Synthesis. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/35A7-K421. https://resolver.caltech.edu/CaltechTHESIS:06052012-121432503

Lee, Wonhee (2008) Microfluidic Chip Calorimeters for Biological Applications. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/W8E0-4W22. https://resolver.caltech.edu/CaltechETD:etd-05282008-103138

Lacenere, Christopher J. (2006) Advances in Single Molecule Nucleic Acid Sequencing. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/CA4B-S389. https://resolver.caltech.edu/CaltechETD:etd-09302006-140602

M

Mayfield, Acacia Michelle Hori (2024) Customized and Modular Control of Gene Expression for Precision Gene Therapies. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/d05v-0t68. https://resolver.caltech.edu/CaltechTHESIS:05312024-185303498

Ma, Yitong (2023) Multicellular Synthetic Biology in Mammalian Systems. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/w0q1-7s17. https://resolver.caltech.edu/CaltechTHESIS:04132023-015900885

Marken, John Paul (2023) Experimental and Theoretical Frameworks for Enabling Environmental Synthetic Biology. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/h50w-p058. https://resolver.caltech.edu/CaltechTHESIS:05292023-181810775

Mahdavi, Alborz (2015) Synthetic Biology Tools for Targeted Incorporation of Non-Canonical Amino Acids into Cellular Proteins. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9W66HS4. https://resolver.caltech.edu/CaltechTHESIS:12052014-154140797

Maerkl, Sebastian Josef (2008) Microfluidic Large Scale Integration and its Application to Systems Biology. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/5CMX-CV08. https://resolver.caltech.edu/CaltechETD:etd-05222007-141119

Mattson, Matthew Sanford (2008) Understanding and Treating Eye Diseases: Mechanical Characterization and Photochemical Modification of the Cornea and Sclera. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/DXGR-GV57. https://resolver.caltech.edu/CaltechETD:etd-05282008-163501

Murphy, Gavin Erick (2007) Cryoelectron Tomography of Bacteria and their Macromolecular Machines. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/517B-0Z68. https://resolver.caltech.edu/CaltechETD:etd-05212007-162731

N

Nunns, Harry James Rogan (2019) Linearity in Cell Signaling Pathways. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/WP0J-E945. https://resolver.caltech.edu/CaltechTHESIS:01222019-133152032

Nandagopal, Nagarajan (2018) New Capabilities of the Notch Signaling Pathway. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z98050TB. https://resolver.caltech.edu/CaltechTHESIS:12282017-140713708

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Park, Jin (2018) Circuits of Dynamically Interacting Sigma Factors in Single Cells. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/CT0B-Q853. https://resolver.caltech.edu/CaltechTHESIS:12312017-234413682

R

Ren, Xinying (Cindy) (2021) Principles for Designing Robust and Stable Synthetic Microbial Consortia. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/hc8x-3280. https://resolver.caltech.edu/CaltechTHESIS:05262021-072231177

Rios, Gustavo (2016) Nanofabricated Neural Probe System for Dense 3-D Recordings of Brain Activity. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9BG2M0B. https://resolver.caltech.edu/CaltechTHESIS:05172016-133516099

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Shur, Andrey Sergeyvich (2022) Serine Integrase-Based Event Recording in E. coli. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/x4q0-nx18. https://resolver.caltech.edu/CaltechTHESIS:12212021-193826426

Su, Christina Janet (2022) Principles of Addressing Specificity in Promiscuous Ligand-Receptor Systems. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/z7dv-m192. https://resolver.caltech.edu/CaltechTHESIS:06022022-032024376

Silverman, Bradley Ross (2020) Protein-Mediated Colloidal Assembly. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/x3ya-fq67. https://resolver.caltech.edu/CaltechTHESIS:05302020-111741817

Shao, Zixuan (2019) Biological Responses to Therapeutic Treatments of Human Vascular Diseases. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/P2S4-AY40. https://resolver.caltech.edu/CaltechTHESIS:05302019-145256322

Shih, Pei-Yin (2019) The Ethology of Stress in Nematodes. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/1E7G-K373. https://resolver.caltech.edu/CaltechTHESIS:01062019-215120039

Swaminathan, Anandh (2018) Application, Computation, and Theory for Synthetic Gene Circuits. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9833Q67. https://resolver.caltech.edu/CaltechTHESIS:12132017-121914940

Shah, Sheel Mukesh (2017) Highly Multiplexed Single Cell In Situ RNA Detection. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9X63JXH. https://resolver.caltech.edu/CaltechTHESIS:12152016-144548062

Sun, Zachary Zhipeng (2016) An in vitro Biomolecular Breadboard for Prototyping Synthetic Biological Circuits. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9TB14TW. https://resolver.caltech.edu/CaltechTHESIS:10012015-221355676

Singer, Zakary Sean (2015) Metastability and Dynamics of Stem Cells: From Direct Observations to Inference at the Single Cell Level. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9ST7MS1. https://resolver.caltech.edu/CaltechTHESIS:05262015-152206802

Srinivas, Niranjan (2015) Programming Chemical Kinetics: Engineering Dynamic Reaction Networks with DNA Strand Displacement. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9KD1VVJ. https://resolver.caltech.edu/CaltechTHESIS:06012015-171243593

Sternberg, Jonathan Ben-Zion (2013) Signal Transduction with Hybridization Chain Reactions. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z90Z719Z. https://resolver.caltech.edu/CaltechTHESIS:06072013-170244348

Schaedel, Oren Noah (2011) Dynamic Regulation of the Dauer Decision. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/JZ9E-AD68. https://resolver.caltech.edu/CaltechTHESIS:04272011-021639361

Sen, Shaunak (2011) Regulatory Consequences of Bandpass Feedback in a Bacterial Phosphorelay. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/NPZD-G382. https://resolver.caltech.edu/CaltechTHESIS:05252011-222115269

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Takei, Yodai (2021) Integrated Spatial Genomics Reveals Organizational Principles of Single-Cell Nuclear Architecture. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/4ces-zm75. https://resolver.caltech.edu/CaltechTHESIS:06022021-012404326

Tan, Frederick Eng How (2014) Brfl Post-Transcriptionally Regulates Pluripotency and Differentiation Responses Downstream of Erk MAP Kinase. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/MM53-XC23. https://resolver.caltech.edu/CaltechTHESIS:05292014-234047875

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Ursell, Tristan Scott (2009) Stretching the Definition of a Lipid Bilayer: Elasticity's Role in Protein and Lipid Organization. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Q0R5-K353. https://resolver.caltech.edu/CaltechETD:etd-06062009-131454

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Venturelli, Ophelia Shalini (2013) Role of Feedback and Dynamics of a Gene Regulatory Network. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/WGK3-Y839. https://resolver.caltech.edu/CaltechTHESIS:06072013-095239958

Vyawahare, Saurabh (2006) Manipulating Fluids: Advances in Micro-Fluidics, Opto-Fluidics and Fluidic Self-Assembly. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/04XY-C430. https://resolver.caltech.edu/CaltechETD:etd-05252006-223101

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Wang, Sheng (2023) Synthetic Circuits for Multicellular Spatial Patterning. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/3rbk-g805. https://resolver.caltech.edu/CaltechTHESIS:06022023-192547723

Ward, Catherine Marie (2011) Medea Selfish Genetic Elements as Tools for Altering Traits of Wild Populations: A Theoretical Analysis. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/T656-ZN91. https://resolver.caltech.edu/CaltechTHESIS:05312011-123357339

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Yong, John (2015) Dynamics and Heterogeneity of Gene Expression and Epigenetic Regulation at the Single-Cell Level. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9ZC80VX. https://resolver.caltech.edu/CaltechTHESIS:04292015-153123844

Young, Jonathan Wan (2012) Architecture, Dynamics, and Function of the General Stress Response System in B. subtilis. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/93MF-Q808. https://resolver.caltech.edu/CaltechTHESIS:05292012-120719001

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Zhu, Ronghui (2023) Multicellular Circuit Design in Mammalian Cells. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/p0fn-qa56. https://resolver.caltech.edu/CaltechTHESIS:07252022-061122576

Zheng, Guoan (2013) Innovations in Imaging System Design: Gigapixel, Chip-Scale and MultiFunctional Microscopy. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/SF6E-S775. https://resolver.caltech.edu/CaltechTHESIS:10102012-101657790