Browse by Advisor

2023

Hirokawa, Soichi (2023) Dynamics of Protein-Mediated Polymer Coupling and their Implications in Antibody Production and Emergent Patterning. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/fpmm-a552. https://resolver.caltech.edu/CaltechTHESIS:08252022-153300158

2022

Banks, Rachel A. (2022) Experimental and Theoretical Studies of Non-Equilibrium Systems: Motor-Microtubule Assemblies and the Human-Earth System. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/5ee6-j454. https://resolver.caltech.edu/CaltechTHESIS:11282021-042001335

Beeler, Suzannah Michelle (2022) Deciphering Regulation in Escherichia coli: From Genes to Genomes. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/p3rg-m937. https://resolver.caltech.edu/CaltechTHESIS:08182021-053622635

Galstyan, Vahe (2022) Studies in Physical Biology: Exploring Allosteric Regulation, Enzymatic Error Correction, and Cytoskeletal Self-Organization Using Theory and Modeling. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/1fzr-1240. https://resolver.caltech.edu/CaltechTHESIS:08242021-212959886

Razo-Mejia, Manuel (2022) Physical Biology of Cellular Information Processing. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/kpc2-b345. https://resolver.caltech.edu/CaltechTHESIS:08242021-212609828

2021

Morrison, Muir (2021) Statistical Mechanics of Problems in Transcription Regulation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/d042-rp26. https://resolver.caltech.edu/CaltechTHESIS:06082021-005042886

2020

Chure, Griffin Daniel (2020) The Molecular Biophysics of Evolutionary and Physiological Adaptation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/q8h6-xr92. https://resolver.caltech.edu/CaltechTHESIS:06022020-102020436

Ireland, William Thornton (2020) A Quantitative and High-Throughput Approach to Gene Regulation in Escherichia coli. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/0sk3-hd69. https://resolver.caltech.edu/CaltechTHESIS:03262020-092455420

2019

Einav, Tal (2019) Taming the Molecular Dance: Harnessing Statistical Mechanics to Quantitatively Characterize Allosteric Systems. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/S4CV-T162. https://resolver.caltech.edu/CaltechTHESIS:06082019-034706928

2018

Barnes, Stephanie Loos (2018) Decoding the Regulatory Genome: Quantitative Analysis of Transcriptional Regulation in Escherichia coli. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/D13T-7868. https://resolver.caltech.edu/CaltechTHESIS:05292018-133205686

Belliveau, Nathan Maurice (2018) Quantitative Dissection of the Allosteric and Sequence-Dependent Regulatory Genome in E. coli. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9DN438T. https://resolver.caltech.edu/CaltechTHESIS:01052018-221609680

Mahmoudabadi, Gita (2018) Virology By The Numbers: A Quantitative Exploration of Viral Energetics, Genomics, and Ecology. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9Q81B91. https://resolver.caltech.edu/CaltechTHESIS:04172018-174233725

2015

Chen, Yi-Ju (2015) The Mechanical Genome in Regulation and Infection. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9PC308X. https://resolver.caltech.edu/CaltechTHESIS:05072015-162723691

2014

Jones, Daniel Lawson III (2014) Sequence-Function Relationships in E. coli Transcriptional Regulation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/4J7V-WD59. https://resolver.caltech.edu/CaltechTHESIS:06022014-165211576

Lovely, Geoffrey A. (2014) Biophysics of V(D)J Recombination and Genome Packaging: In Singulo Studies on RAG, HMGB1, and TFAM. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Z9W9573H. https://resolver.caltech.edu/CaltechTHESIS:06072014-140700155

Rydenfelt, Mattias Sven Olof (2014) The Combinatorics of Transcriptional Regulation. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/PNX5-Y638. https://resolver.caltech.edu/CaltechTHESIS:05162014-140751409

2013

Bialecka-Fornal, Maja I. (2013) Single-Cell Analysis of the Physiology of Mechanosensation in Bacteria. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/7SRD-WS94. https://resolver.caltech.edu/CaltechTHESIS:05142013-213725125

2012

Johnson, Stephanie Lynn (2012) DNA Mechanics and Transcriptional Regulation in the E. coli lac Operon. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/W40T-PD39. https://resolver.caltech.edu/CaltechTHESIS:05112012-140027276

2011

Garcia, Hernan G. (2011) Transcriptional Regulation by the Numbers. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/63RG-8P84. https://resolver.caltech.edu/CaltechTHESIS:12162010-123122193

Tadmor, Arbel David (2011) Phage-Host Interaction in Nature. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/68Q5-D532. https://resolver.caltech.edu/CaltechTHESIS:05252011-233927917

Van Valen, David Ashley (2011) Case Studies in Quantitative Biology: Biochemistry on a Leash and a Single-Molecule Hershey-Chase Experiment. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/FJW3-G615. https://resolver.caltech.edu/CaltechTHESIS:05112011-144451576

2010

Wu, David Dah-wei (2010) Biomechanical Information Transfer: Maximum Caliber, λ Genome Ejection Dynamics, and the Formation of Otoliths in Zebrafish. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/X454-MV52. https://resolver.caltech.edu/CaltechTHESIS:05182010-213110299

2009

Ursell, Tristan Scott (2009) Stretching the Definition of a Lipid Bilayer: Elasticity's Role in Protein and Lipid Organization. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/Q0R5-K353. https://resolver.caltech.edu/CaltechETD:etd-06062009-131454

2008

Han, Lin (2008) In vitro DNA Mechanics in Gene Regulation: One Molecule at a Time. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/7573-A922. https://resolver.caltech.edu/CaltechETD:etd-01282008-150852

Peterson, Eric Lee (2008) A Random Walk in Physical Biology. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/X00X-VC27. https://resolver.caltech.edu/CaltechETD:etd-05282008-152952

Seitaridou, Effrosyni (2008) Non-Equilibrium Dynamics: Diffusion in Small Numbers and Ribosomal Self-Assembly. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/X12R-DA46. https://resolver.caltech.edu/CaltechETD:etd-05142008-113003

2007

Grayson, Paul Daniel (2007) The DNA Ejection Process in Bacteriophage λ. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/A7ED-4044. https://resolver.caltech.edu/CaltechETD:etd-05252007-103551

2006

Inamdar, Mandar Mukund (2006) Dissipative Nanomechanics. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/P5K9-BD68. https://resolver.caltech.edu/CaltechETD:etd-03272006-142956

2005

Wiggins, Paul Alexander (2005) Biology Beyond Biochemistry:The Mechanics of Life. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/015B-JA11. https://resolver.caltech.edu/CaltechETD:etd-05262005-134552