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Dynamic Regulations of Co-translational Protein Targeting by the Signal Recognition Particle Receptor in E. coli and Human

Citation

Hwang-Fu, Yu-Hsien (2019) Dynamic Regulations of Co-translational Protein Targeting by the Signal Recognition Particle Receptor in E. coli and Human. Dissertation (Ph.D.), California Institute of Technology. doi:10.7907/STGW-8V12. https://resolver.caltech.edu/CaltechTHESIS:12122018-102847326

Abstract

The Signal Recognition Particle (SRP) and its receptor (SR) co-translationally deliver the majority of secretory and membrane proteins to their membrane destinations. SRP recognizes and binds to the cargo, and SR recruits the transit complex to the target membrane. Precise timing and coordination are encoded into the interactions between SRP and SR in response to the cargo and environment to enable efficient and accurate targeting. This dissertation explores the regulation mechanisms of SRP membrane recruitment by SR in both bacteria and eukaryotes.

The bacterial SR is a peripheral membrane protein and recruits SRP by adjusting its membrane-binding modes. A complete kinetic model of SRP membrane recruitment by the SR was established based on direct observations and quantitative analyses of protein-membrane binding events at single-molecule resolution. Biochemical and cell biological examinations validated the physiological significance of the newly discovered dynamic membrane-binding mode of the SR. The two-stage SR membrane binding mechanism ensures both speed and specificity in bacterial co-translational protein targeting.

In eukaryotes, a proper initial recognition of SRP sets the right course for membrane delivery of the transit complex, as eukaryotic SR is anchored on the endoplasmic reticulum. A Molecular Recognition Feature (MoRF) in the disordered linker domain of eukaryotic SR was identified and characterized. The SR MoRF element enables rapid SRP-SR assembly in response to the ribosomal content of the cargo. The stimulation by SR MoRF is only present in eukaryotes and is likely a functional replacement of the tetraloop in bacterial SRP RNA whose stimulatory role was abolished during evolution.

Item Type:Thesis (Dissertation (Ph.D.))
Subject Keywords:Co-translational protein targeting; Signal Recognition Particle; SRP Receptor; Protein-membrane interaction; Intrinsically disordered protein region; Molecular Recognition Feature
Degree Grantor:California Institute of Technology
Division:Chemistry and Chemical Engineering
Major Option:Chemistry
Thesis Availability:Public (worldwide access)
Research Advisor(s):
  • Shan, Shu-ou
Thesis Committee:
  • Clemons, William M. (chair)
  • Miller, Thomas F.
  • Parker, Carl Stevens
  • Shan, Shu-ou
Defense Date:10 December 2018
Non-Caltech Author Email:giselle.hwangfu (AT) gmail.com
Funders:
Funding AgencyGrant Number
NIHGM078024
Gordon and Betty Moore FoundationGBMF2939
Record Number:CaltechTHESIS:12122018-102847326
Persistent URL:https://resolver.caltech.edu/CaltechTHESIS:12122018-102847326
DOI:10.7907/STGW-8V12
Related URLs:
URLURL TypeDescription
https://doi.org/10.7554/eLife.25885DOIArticle adapted for Chapter 2.
ORCID:
AuthorORCID
Hwang-Fu, Yu-Hsien0000-0002-2861-4843
Default Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:11309
Collection:CaltechTHESIS
Deposited By: Yu Hsien Hwang Fu
Deposited On:08 Jan 2019 20:29
Last Modified:26 May 2021 01:06

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